WebMar 26, 2024 · In ctDNAtools: Analyze Circulating Tumor DNA Sequencing Data. Description Usage Arguments Examples. View source: R/vcf_to_mutations_df.R. Description. Uses VariantAnnotation::readVcfAsVRanges to read the vcf file, which return variants in a format that each row is one variant. If the vcf has multiple samples, the … WebJan 21, 2024 · The ctDNAtools package is mainly built on GenomicAlignments and Rsamtools packages, and most functions require inputs including one or more of a bam …
create_background_panel function - RDocumentation
WebMar 26, 2024 · In ctDNAtools: Analyze Circulating Tumor DNA Sequencing Data. Description Usage Arguments Details Value See Also Examples. View source: … WebHere, we present the ctDNAtools R package, which provides functionalities for testing minimal residual disease (MRD) and analyzing cfDNA fragmentation. MRD detection in ctDNAtools utilizes a Monte Carlo sampling approach to test ctDNA positivity through tracking a set of pre-detected reporter mutations in follow-up samples. how about you แปลว่า
create_black_list function - RDocumentation
WebToggle navigation ctDNAtools 0.4.0. Get started; Reference; Changelog; Collapses mutations in phase into one event Source: R/merge_mutations_in_phase.R. merge_mutations_in_phase.Rd. Given a mutations data frame and a bam file, this function collapses mutations in phase identified by the ID_column into one event. While doing … WebJan 27, 2024 · Here, we present the ctDNAtools R package, which provides functionalities for testing minimal residual disease (MRD) and analyzing cfDNA fragmentation. MRD … WebJan 28, 2024 · The ctDNAtools R package is presented, which provides functionalities for testing minimal residual disease (MRD) and analyzing cfDNA fragmentation and includes … how about you 和 what about you